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GST Refund Pending or Rejected? How to Check Status and Fix the Next Step

A pending GST refund may be awaiting officer action, a corrected fresh filing, a reply to notice, an order-specific remedy, or bank validation. Find the stage and act on the form you received.
From TheFinanceBase Team4 min to read
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If your GST refund is delayed, first identify its exact stage: check the application on the GST Portal using its ARN, then check PFMS if the officer has acted but the payment has not reached your bank. The remedy depends on what you received: an RFD-03 calls for a corrected fresh application, an RFD-08 calls for a reply, an RFD-06 is an order to assess, and a bank-validation hold needs a payment-status follow-up.

Check whether the refund is pending with the officer or with the payment system

  1. On the GST Portal, open Services > Refunds > Track Application Status. Search using the filing year or your ARN. The result identifies the application stage and whether action is pending with the officer or taxpayer. GST Portal/GSTN’s tracking advisory explains this check.
  2. If the officer has acted but the money has not arrived, check the bank-validation or disbursal status on PFMS. The GST Portal tracks the application stage; PFMS tracks bank validation and payment. The advisory separates the two.
  3. Read the form and communication date, not just a general “pending” label. The form determines whether you need to correct and refile, respond to a notice, consider an order-specific remedy, or follow up on payment.

Bank validation can be relevant at two points: the officer can issue a payment order only after PFMS validates the account in the RFD-01 application, and final disbursal follows validation of the bank account specified in RFD-05. A delay at either point does not by itself mean the refund claim was rejected. The official advisory describes these steps.

What each refund status or form means

Form or status What it indicates What to do next
RFD-03 A deficiency memo issued during scrutiny of the application’s completeness; it is not an RFD-06 decision on the claim’s merits. Correct the deficiencies listed in the memo and submit a fresh refund application. CBIC’s refund rules and Rule 92.
RFD-08 A notice that the officer considers some or all of the refund inadmissible or not payable. Reply in RFD-09 within 15 days of receiving the notice. CBIC’s refund rules.
RFD-06 An order that may sanction the claim, sanction part of it, or reject it. Read the reasons, amount sanctioned or adjusted, and order date; determine the remedy and deadline for this specific order. CBIC’s refund rules and Rule 92.
Payment or bank validation The officer’s decision and transfer to your bank are separate stages; validation may still be outstanding. Check PFMS for validation and disbursal status. GST Portal/GSTN’s tracking advisory.

If you received an RFD-03 deficiency memo

Use the memo as your correction checklist. For each deficiency stated or selected by the officer, review the refund category, tax period, amount calculation, and supporting evidence relevant to that issue. Correct the identified problems, submit a fresh refund application, and retain both the memo and the new ARN with your filing records.

The prescribed next step is a fresh application after correction, not waiting for the original application to resume. CBIC’s 2018 circular states: “No order in FORM GST RFD-04/06 can be issued in respect of an application against which a deficiency memo has been issued and which has not been resubmitted subsequently.” Circular No. 59/33/2018-GST. Check the current rules alongside the 2018 circular.

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If you received an RFD-08 notice

Respond in RFD-09 to the grounds in the notice within 15 days of receiving it. Address each stated reason and attach the relevant supporting material. The rule requires the officer to consider your reply before issuing an RFD-06 order. Keep a copy of the notice, your response and attachments, and evidence of filing. CBIC’s refund rules.

If an RFD-06 order rejects all or part of the claim

Read the order’s reasons, the amount allowed or rejected, any adjustment, and the date it was communicated. Do not treat the fresh-filing step for RFD-03 as a substitute for challenging an RFD-06 order.

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The GST Portal’s appeal FAQ describes a three-month period from communication of an order, with possible condonation of up to one further month for sufficient cause, and a pre-deposit for the demand-order appeals it covers. Because that FAQ is specifically about appeals against demand orders, it does not establish the correct route or deadline for every refund order. Verify the statutory appeal route, limitation period, pre-deposit, and refund-specific requirements against your order and current law. For a material amount or deadline, consult a qualified Indian GST practitioner or chartered accountant. GST Portal FAQ: Filing an Appeal against Demand Order (FORM GST APL-01).

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Can you withdraw or correct an application that is still processing?

GSTN’s February 2021 functionality note described withdrawal using RFD-01W before an officer issued an RFD-02 acknowledgement or RFD-03 deficiency memo. The current rule text also describes withdrawal before specified refund orders or notices, so the older functionality note may not cover every live application. Check current eligibility in the Portal before assuming withdrawal is available. GSTN’s functionality note and CBIC’s refund rules.

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